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    Home » Recipes » Bread & Baking » Quick Breads

    Whole Grain Pecan Muffins with Sprouted Wheat Flour

    Published: Mar 5, 2021 · Modified: Aug 14, 2025 by Amy Sandidge · This post may contain affiliate links · Leave a Comment

    Jump to Recipe

    These bakery-style pecan muffins are rich, nutty, and full of warm flavor. Sprouted wheat flour gives them a slightly sweet, complex taste and a tender texture, while toasted pecans add crunch in every bite. They’re perfect for weekend baking and freeze beautifully so you can enjoy them any time.

    Sprouted wheat flour muffins on a cooling rack with flowers in the background.

    Let me share a few other baked goods I love. One of my favorites is Whole Wheat Buttermilk Biscuits, so fluffy no one will know they’re full of whole grains.  Your family will love these gorgeous Blueberry Crumb Muffins made with kamut flour, as well as this super moist and tender Einkorn Banana Bread. Is it breakfast yet?

    Ingredients

    • Sprouted wheat flour- There are several varieties you can purchase. I prefer sprouted spelt or sprouted wheat (which is usually a red wheat).
    • Baking powder and baking soda- I use both in this recipe for the perfect rise.
    • Salt- It won't take much, but don't leave it out.
    • Butter- I use salted butter in this recipe, and honestly, almost all my recipes.
    • Brown sugar- granulated can be used, but I love the rich brown sugar flavor in this recipe.
    • Eggs- large eggs
    • Milk- This is an additional liquid to help the muffins from drying out.
    • Vanilla- I used Trader Joe's bourbon vanilla paste, but use what you prefer.
    • Nuts- These are optional, but I love the crunch they add. I used walnuts, but pecans are also very tasty as well.
    • Raw sugar- Optional as well, but I like to sprinkle a little over the top of the muffins prior to baking.
    Ingredients for muffins in small bowls on a surface.

    How to make

    • Preheat oven to 375°F (190°C). Line a 12-cup muffin tin with paper liners or grease lightly.
    • Toast the walnuts – Spread walnuts on a baking sheet and toast for 5–7 minutes until fragrant. Set aside to cool, then roughly chop.
    • Mix the dry ingredients – In a medium bowl, whisk together sprouted wheat flour, baking powder, baking soda, and salt.
    • Mix the wet ingredients – In a large bowl, whisk together melted butter, brown sugar, eggs, milk, and vanilla until smooth.
    • Combine – Add the dry ingredients to the wet and mix gently until just combined. Fold in 1 cup of the chopped walnuts, reserving the rest for topping.
    • Fill and top – Fill the muffin cups ¾ of the way full. Sprinkle the remaining walnuts over the tops.
    • Bake – Bake for 18–22 minutes, or until a toothpick inserted into the center comes out with a few crumbs.
    • Cool – Let muffins cool in the tin for 5 minutes, then transfer to a wire rack to cool completely.
    Batter for muffins in a glass bowl.
    Sprouted flour muffin batter in a glass bowl with a wooden spoon.
    Chopped walnuts on muffin batter in a glass bowl with a wooden spoon.
    Muffin batter in a muffin pan ready for baking.

    Storage

    Store cooled muffins in an airtight container at room temperature for up to 3 days.
    Freeze for up to 1 month; thaw at room temperature or warm briefly in the oven before serving.

    Sprouted wheat flour muffins on a cooling rack with chopped walnuts on top.

    Flavor Variations

    • Add ½ teaspoon cinnamon or ¼ teaspoon cardamom for warm spice.
    • Stir in ½ cup dried cherries or cranberries for a fruity touch.
    • Other nuts would work well in this recipe as well. Some of my favorites are pecans and hazelnuts.
    • If you want a chocolate twist, add ¾ cup mini chocolate chips to the batter.
    Sprouted wheat flour muffins topped with chopped walnuts on a cooling rack with pink flowers in the background.
    Sprouted wheat flour muffins on a cooling rack with flowers in the background.

    Whole Grain Pecan Muffins with Sprouted Wheat Flour

    Amy Sandidge
    Whole Grain Pecan Muffins with Sprouted Wheat Flour are tender, nutty, and packed with toasted pecans. Perfect for weekend baking with simple flavor variations.
    5 from 2 votes
    Print Recipe Pin Recipe
    Prep Time 15 minutes mins
    Cook Time 17 minutes mins
    Total Time 32 minutes mins
    Course Breakfast
    Cuisine American
    Servings 12 muffins

    Ingredients
      

    • 1 ¾ cup sprouted wheat flour
    • 1 tablespoon baking powder
    • ½ teaspoon baking soda
    • ½ teaspoon salt
    • ½ cup melted butter
    • ¾ cup brown sugar
    • 2 eggs
    • 1 teaspoon vanilla
    • ¾ cup milk
    • 1 ½ cups chopped walnuts

    Instructions
     

    • Preheat oven to 375°F (190°C). Line a 12-cup muffin tin with paper liners or grease lightly.
    • Toast the walnuts – Spread walnuts on a baking sheet and toast for 5–7 minutes until fragrant. Set aside to cool, then roughly chop.
    • Mix the dry ingredients – In a medium bowl, whisk together sprouted wheat flour, baking powder, baking soda, and salt.
    • Mix the wet ingredients – In a large bowl, whisk together melted butter, brown sugar, eggs, milk, and vanilla until smooth.
    • Combine – Add the dry ingredients to the wet and mix gently until just combined. Fold in 1 cup of the chopped walnuts, reserving the rest for topping.
    • Fill and top – Fill the muffin cups ¾ of the way full. Sprinkle the remaining walnuts over the tops.
    • Bake – Bake for 18–22 minutes, or until a toothpick inserted into the center comes out with a few crumbs.
    • Cool – Let muffins cool in the tin for 5 minutes, then transfer to a wire rack to cool completely.
    Keyword baking powder, baking soda, brown sugar, muffins, sprouted wheat flour, walnuts
    Tried this recipe?Let us know how it was!
    • Quick Breads
    • Baked
    • Sprouted Grains
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    Simple Sprouted Oat Pancakes »

    Reader Interactions

    5 from 2 votes (2 ratings without comment)

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    Hi, I'm Amy! I am a culinary school graduate creating a comprehensive collection of recipes, with a focus on incorporating whole grains. My goal is to craft dishes that resonate with the whole family. 

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